Publications & Preprints

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2026

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• Francis, H., Januszewski, A.S., O'Rourke, M.B., Huang, M.L., Ema, F.K., Hardikar, A.A., Joglekar, M.V., Sullivan, D.R., Ma, R.C., Galande, S. and Gebski, V., 2026. Unveiling novel biomarkers for diabetes-related complications through large-scale proteomics analysis: A FIELD sub-study. Journal of Diabetes and its Complications, p.109330.

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• ​Pawar, S., Khandagale, S., Amin, S., Wagh, V., Wagh, R., Kamble, V., Fall, C., Galande, S., Yajnik, C.S. and Khare, S.P., 2026. Vitamin B12 and expression of methylases and demethylases in cord blood: a novel exploratory finding in the Pune Rural Intervention in Young Adolescents (PRIYA) trial. Journal of Developmental Origins of Health and Disease, 17, p.e4.

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• Sharma, A., Mishra, S., Dsilva, G.J., Pradhan, S.J., Govardhan, P.D. and Galande, S., 2026. Conserved Roles of Sp1 in Zebrafish Development and Early Organogenesis. bioRxiv, pp.2026-01.

2025

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• Kalim, U.U., Shetty, A., Ranade, A., Rundquist, O., Starskaia, I., Batkulwar, K., Välikangas, T., Sousa, A.G., Hurme, A., Kumpulainen, V. Viitala, M.,...Galande, S., Lahesmaa, R., 2025. LINC01871 is exclusively expressed in T and NK cells and is highly induced upon CD4+ T cell activation. iScience. 113779

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• Tripathi, S., Gupta, E., Naik, R., Khare, S., Mir, R., Kamat, S. and Galande, S. 2025., Statins exhibit anti-tumor potential by modulating Wnt/β-catenin signaling in colorectal cancer. Oncotarget, 16, p.562.

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• Jayaram, A., Galande, S., Sharbati, S., Deshpande, D. and Pawar, K., 2025. Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival. RNA biology, 22, p 1-9.

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• Patil, P.S., Saklani, A., Kumar, N.A., De’Souza, A., Krishnatry, R., Khanvilkar, S., Kazi, M., Engineer, R., Ostwal, V., Ramaswamy, A., Bal, M., Ranganathan, P., Gupta, E., and Galande, S., 2025. A randomized phase II/III trial of rosuvastatin with neoadjuvant chemo-radiation in patients with locally advanced rectal cancer. Frontiers in Oncology, 15, p.1450602.

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• Madhok, A., Patta, I., Desai, I., Tayyab, M., Choudhary, V., Vishwakarma, S., Saha, S., Lahesmaa, R., Narlikar, G. and Galande, S., 2025. Satb1 integrates cohesin mediated genome organization and transcriptional regulation during T cell development. bioRxiv, pp.2025-06.

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• Sharma, A., Dsliva, G.J., Pradhan, S.J., Mishra, S., Santhakumar, K. and Galande, S., 2025. SP1 amplifies the effects of cellular proliferation via the Wnt/β-catenin pathway in colon development and cancer. bioRxiv, pp.2025-06.

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• Saw, A.K., Madhok, A., Bhattacharya, A., Nandi, S. and Galande, S., 2025. Integrated promoter-capture Hi-C and Hi-C analysis reveals fine-tuned regulation of the 3D chromatin architecture in colorectal cancer. Frontiers in Genetics, 16, p.1553469

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2024

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• Pillai, A., Verma, V., & Galande, S. (2024). CHARM and EvoETR: Precision epigenetic tools for​

       gene silencing. BioEssays, e2400186.

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• Sharma, A., Dsilva, G.J., Deshpande, G. and Galande, S., Exploring the versatility of zygotic genome regulators: A comparative and functional analysis, Cell Reports (2024), https://doi.org/10.1016/j.celrep.2024.114680.

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• Tripathi S.*, Gupta E.*, Galande, S. # 2024. Statins as anti-tumor agents: A paradigm for repurposed drugs. Cancer Reports 7:e2078. https://doi.org/10.1002/cnr2.2078.

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• Sawant, A.A., Tripathi S., Galande, S. and Sudha Rajamani. # 2024. A Prebiotic Genetic Nucleotide as an Early Darwinian Ancestor for Pre-RNA Evolution. ACS Omega https://doi.org/10.1021/acsomega.3c09949.

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• Dsilva, G.J. and Galande, S., 2024. From sequence to consequence: Deciphering the complex cis-regulatory landscape. Journal of Biosciences, 49(2), pp.1-11.

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• Suresh V., Bhattacharya, B., Tshuva, R. Y., Gotthold, M. D., Olender, T., Bose, M., Pradhan, S. J., Zeev, B. B., Smith, R. S., Tole, S., Galande, S., Harwell, C., Baizabal, J. M., Reiner, O. # 2024. PRDM16 co-operates with LHX2 to shape the human brain Oxford Open Neuroscience 3:1-16. https://doi.org/10.1093/oons/kvae001.

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• Dandia H. Y., Pillai, M. M., Sharma, D., Suvarna, M., Dalal, N., Madhok, A., Ingle, A.,Chiplunkar, S. V., Galande, S. and Tayalia, P. # 2024. Acellular scaffold‑based apprch for in situ genetic engineering of host T‑cells in solid tumor immunotherapy. MilitaryMedical Research 11:3. https://doi.org/10.1186/s40779-023-00503-6.

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2023

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• Mahajan S., Sen S., Sunil A., Srikanth P., Marathe S.D, Shaw K., Sahare M., Galande S.#, and Abraham N.A.# 2023. Knockout of ACE2 receptors lead to morphological aberrations in rodent olfactory centers and dysfunctions associated with sense of smell. Frontiers in Neuroscience, 17:1180868. doi: 10.3389/fnins.2023.1180868

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• Gungi, A., Saha, S., Pal, M. and Galande, S. #, 2023. H4K20me1 plays a dual role in transcriptional regulation of regeneration and axis patterning in Hydra. Life Science Alliance, 6(5).

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• Chee, J.M., Lanoue, L., Clary, D., Higgins, K., Bower, L., Flenniken, A., Guo, R., Adams, D.J., Bosch, F., Braun, R.E., Brown, S.D., H.‑J. Genie Chin, Dickinson, M.E., Hsu C.-W., Dobbie M., Gao X., Galande S., Grobler A., Heaney J.D., Herault Y., de Angelis M.H., Mammano F., Nutter L.M.J., Parkinson H., Qin C., Shiroishi T., Sedlacek R., Seong J.-K., Xu Y., The International Mouse Phenotyping Consortium, Brooks B., McKerlie C., Lloyd K.C.K., Westerberg H. and Moshiri A. 2023. Genome-wide screening reveals the genetic basis of mammalian embryonic eye development. BMC biology, 21(1), pp.1-15.

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• O'Rourke, M.B., Januszewski, A.S., Sullivan, D.R., Lengyel, I., Stewart, A.J., Arya, S., Ma, R.C., Galande, S., Hardikar, A.A., Joglekar, M.V. and Keech, A.C., Jenkins A.J., Molloy M. P., 2023. Optimised plasma sample preparation and LC‐MS analysis to support large‐scale proteomic analysis of clinical trial specimens: Application to the Fenofibrate Intervention and Event Lowering in Diabetes (FIELD) trial. PROTEOMICS–Clinical Applications, 17(3), p.2200106.

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• Khare, S.P. *, Madhok, A. *, Patta, I., Sukla, K.K., Wagh, V.V., Kunte, P.S., Raut, D., Bhat, D., Kumaran, K., Fall, C. and Tatu, U., Chandak G.R., Yajnik C. S. #, Galande, S. # 2023. Differential expression of genes influencing mitotic processes in cord blood mononuclear cells after a pre-conceptional micronutrient-based randomised controlled trial: Pune Rural Intervention in Young Adolescents (PRIYA). Journal of Developmental Origins of Health and Disease, 14: 437–448. doi: 10.1017/S204017442200068X

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2022

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• Higgins, K., Moore, B.A., Berberovic, Z., Adissu, H.A., Eskandarian, M., Flenniken, A.M., Shao, A., Imai, D.M., Clary, D., Lanoue, L. and Newbigging, S., Nutter L.M.J., Adams D.J., Bosch F., Braun R.E, Brown S.D.M., Dickinson M.E., Dobbie M., Flicek P., Gao X., Galande S., Grobler A., Heaney J.D., Herault Y., de Angelis M.H., Chin H.-J. G., Mammano F., Qin C., Shiroishi T, Sedlacek R., Seong J.‑K., Xu Y., The IMPC Consortium, Lloyd K.C.K., McKerlie C., and Moshiri A. 2022. Analysis of genome-wide knockout mouse database identifies candidate ciliopathy genes. Scientific Reports, 12(1), p.20791.

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2021​

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• Pradhan, S.J., Reddy, P.C., Smutny, M., Sharma, A., Sako, K., Oak, M.S., Shah, R., Pal, M., Deshpande, O., Dsilva, G. and Tang, Y., 2021. Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis. Nature Communications, 12(1), pp.1-19.

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• Pandit, P., Galande, S. and Iris, F., 2021. Maternal malnutrition and anaemia in India: dysregulations leading to the ‘thin-fat’phenotype in newborns. Journal of Nutritional Science, 10.

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• Unni, M.K., Reddy, P.C. and Galande, S., 2021. Identification of components of the Hippo pathway in Hydra and potential role of YAP in cell division and differentiation. Frontiers in Genetics, p.1903.

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• Madhok, A., Bhat, S.A., Philip, C.S., Sureshbabu, S.K., Chiplunkar, S. and Galande, S., 2021. Transcriptome Signature of Vγ9Vδ2 T Cells Treated With Phosphoantigens and Notch Inhibitor Reveals Interplay Between TCR and Notch Signaling Pathways. Frontiers in immunology, p.3389.

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• Shah, R., Sharma, A., Kelkar, A., Sengupta, K. and Galande, S., 2021. A novel cis regulatory element regulates human XIST in CTCF-dependent manner. Molecular and Cellular Biology, pp.MCB-00382.

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• Sharma, A., Mir, R. and Galande, S., 2021. Epigenetic Regulation of the Wnt/β-Catenin Signaling Pathway in Cancer. Frontiers in Genetics, 12.

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• Pillai, A., Gungi, A., Puli, C.R. and Galande, S., 2021. Epigenetic regulation in Hydra: conserved and divergent roles. Frontiers in Cell and Developmental Biology, 9, p.1155.

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• Shetty, A., Bhosale, S.D., Tripathi, S.K., Buchacher, T., Biradar, R., Rasool, O., Moulder, R., Galande, S. and Lahesmaa, R., 2021. Interactome Networks of FOSL1 and FOSL2 in Human Th17 Cells. ACS omega.

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• Ramanujam, P. L., Mehrotra, S., Kumar, R. P., Verma, S., Deshpande, G., Mishra, R. K., & Galande, S. (2021). Global chromatin organizer SATB1 acts as a context-dependent regulator of the Wnt/Wg target genes. Scientific reports, 11(1), 3385. 

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2020

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• Reddy, P. C., Gungi, A., Ubhe, S., & Galande, S. 2020. Epigenomic landscape of enhancer elements during Hydra head organizer formation. Epigenetics & Chromatin, 13(1), 43

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• Naik, S., Unni, M., Sinha, D., Rajput, S. S., Reddy, P. C., Kartvelishvily, E., Solomonov, I., Sagi, I., Chatterji, A., Patil, S., & Galande, S. 2020. Differential tissue stiffness of body column facilitates locomotion of Hydra on solid substrates. The Journal of Experimental Biology, jeb.232702. Advance online publication. 

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• Mehrotra, S., Bansal, P., Oli, N. and Galande, S., 2020. Defective Proventriculus regulates cell specification in the gastric region of Drosophila intestine. Frontiers in Physiology, 11, p.711.

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• Patta I, Madhok A, Khare SP, Gottimukkala KP, Verma A, Giri S, Dandewad V, Seshadri V, Lal G, Misra-Sen J and Galande S. 2020. Dynamic regulation of chromatin organizer SATB1 via TCR induced alternative promoter switch during T-cell development. Nucleic Acids Res (May 11:gkaa321. doi: 10.1093/nar/gkaa321. Online ahead of print). PMID: 32392347.

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• Lloyd KCK, Adams DJ, Baynam G, Beaudet AL, Bosch F, Boycott KM, Braun RE, Caulfield M, Cohn R, Dickinson ME, Dobbie MS, Flenniken AM, Flicek P, Galande S, Gao X, Grobler A, Heaney JD, Herault Y, de Angelis MH, Lupski JR, Lyonnet S, Mallon AM, Mammano F, MacRae CA, McInnes R, McKerlie C, Meehan TF, Murray SA, Nutter LMJ, Obata Y, Parkinson H, Pepper MS, Sedlacek R, Seong JK, Shiroishi T, Smedley D, Tocchini-Valentini G, Valle D, Wang CL, Wells S, White J, Wurst W, Xu Y, Brown SDM. 2020. The Deep Genome Project. Genome Biol. 21:18. doi: 10.1186/s13059-020-1931-9.

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• Reddy PC, Pradhan SJ, Karmodiya K, Galande S. 2020. Origin of RNA Polymerase II pause in eumetazoans: Insights from Hydra. J Biosci. 45. pii: 8.

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2019

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• Narlikar G, Galande S.  2019 Topical collection on Chromatin Biology and Epigenetics. J Biosci. 45. pii: 1.

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• Reddy, P.C., Gungi, A., Ubhe, S., Pradhan, S.J., Kolte, A. and Galande, S., 2019. Molecular signature of an ancient organizer regulated by Wnt/β-catenin signalling during primary body axis patterning in Hydra. Communications Biology, 2(1), pp.1-11.

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• Khare, S.P., Shetty, A., Biradar, R., Patta, I., Chen, Z.J., Sathe, A.V., Reddy, P.C., Lahesmaa, R. and Galande, S., 2019. NF-κB Signaling and IL-4 Signaling Regulate SATB1 Expression via Alternative Promoter Usage During Th2 Differentiation. Frontiers in Immunology, 10.

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• Muley, V.Y., Akhter, Y. and Galande, S., 2019. PDZ Domains Across the Microbial World: Molecular Link to the Proteases, Stress Response, and Protein Synthesis. Genome Biology and Evolution, 11(3), pp.644-659.

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• Tripathi, S. K., Välikangas, T., Shetty, A., Khan, M. M., Moulder, R., Bhosale, S. D., Komsi, E., Salo, V., De Albuquerque, R. S., Rasool, O., Galande, S., Elo, L. L., & Lahesmaa, R. (2019). Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization. iScience, 11, 334–355. https://doi.org/10.1016/j.isci.2018.12.020

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• Balyan, R., Gund, R., Chawla, A.S., Khare, S.P., Pradhan, S.J., Rane, S., Galande, S., Durdik, J.M., George, A., Bal, V. and Rath, S., 2019. Correlation of cell‐surface CD 8 levels with function, phenotype and transcriptome of naive CD 8 T cells. Immunology, 156(4), pp.384-401.

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2018

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• Naik, Rutika, and Sanjeev Galande. "SATB family chromatin organizers as master regulators of tumor progression." Oncogene (2018): 1.

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• Mir R, Sharma A, Pradhan SJ, Galande S. (2018). Regulation of Transcription Factor SP1 by the β-Catenin Destruction Complex Modulates Wnt Response. Molecular and Cellular Biology Oct 2018, 38 (22) e00188-18

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• Jangid RK, Kelkar A, Muley VY, Galande S. (2018). Bidirectional promoters exhibit characteristic chromatin modification signature associated with transcription elongation in both sense and antisense directions. BMC Genomics. 2018 May 2;19(1):313. doi: 0.1186/s12864-018-4697-7.

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• Manjunath GP, Ramanujam PL, Galande S. (2018).Structure-function relations in PDZ-domain containing-proteins: Implications for protein networks in cellular signalling. J Biosci. 2018 Mar;43(1):155-171.

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2017

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• Sawant AA, Galande S, Srivatsan SG (2017). Imaging Newly Transcribed RNA in Cells by Using a Clickable Azide-Modified UTP Analog. Methods Mol Biol. 2018;1649:359-371. 

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• Muralidharan B, Keruzore M, Pradhan SJ, Roy B, Shetty AS, Kinare V, D'Souza L, Maheshwari U, Karmodiya K, Suresh A, Galande S, Bellefroid EJ, Tole S. (2017).  Dmrt5, a Novel Neurogenic Factor, Reciprocally Regulates Lhx2 to Control the Neuron-Glia Cell-Fate Switch in the Developing Hippocampus. J Neurosci. 2017 Nov 15;37(46):11245-11254.

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• Reddy PC, Ubhe S, Sirwani N, Lohokare R, Galande S. (2017). Rapid divergence of histones in Hydrozoa (Cnidaria) and evolution of a novel histone involved in DNA damage response in hydra. Zoology (Jena). pii: S0944-2006(16)30135-0.

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• Muralidharan B, Khatri Z, Maheshwari U, Gupta R, Roy B, Pradhan SJ, Karmodiya K, Padmanabhan H, Shetty AS, Balaji C, Kolthur-Seetharam U, Macklis JD, Galande S, Tole S. (2017). LHX2 Interacts with the NuRD Complex and Regulates Cortical Neuron Subtype Determinants Fezf2 and Sox11. J Neurosci. 2017 Jan 4;37(1):194-203.

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• Sako, K., Pradhan, Saurabh J., Barone, V., Inglés-Prieto, Á., Müller, P., Ruprecht, V., Čapek, D., Galande, S., Janovjak, H., and Heisenberg, C.-P., 2016. Optogenetic Control of Nodal Signaling Reveals a Temporal Pattern of Nodal Signaling Regulating Cell Fate Specification during Gastrulation. Cell Reports.​

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2016

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• Gottimukkala, K.P., Jangid, R., Patta, I., Sharma, A., Misra-Sen, J. and Galande, S., 2016. Regulation of SATB1 during thymocyte development by TCR signaling. Molecular Immunology, 77, pp.34-43.

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• Sako, K., Pradhan, Saurabh J., Barone, V., Inglés-Prieto, Á., Müller, P., Ruprecht, V., Čapek, D., Galande, S., Janovjak, H., and Heisenberg, C.-P. Optogenetic Control of Nodal Signaling Reveals a Temporal Pattern of Nodal Signaling Regulating Cell Fate Specification during Gastrulation. Cell Reports.

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• Pusalkar, M., Ghosh, S., Jaggar, M., Husain, B.F.A., Galande, S., and Vaidya, V.A. (2016). Acute and Chronic Electroconvulsive Seizures (ECS) Differentially Regulate the Expression of Epigenetic Machinery in the Adult Rat Hippocampus. International Journal of Neuropsychopharmacology.

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• Sawant, A.A., Mukherjee, P.P., Jangid, R.K., Galande, S., and Srivatsan, S.G. (2016). A clickable UTP analog for the posttranscriptional chemical labeling and imaging of RNA. Organic & Biomolecular Chemistry 14, 5832-5842.

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• Sawant, A.A., Tanpure, A.A., Mukherjee, P.P., Athavale, S., Kelkar, A., Galande, S. and Srivatsan, S.G., 2016. A versatile toolbox for posttranscriptional chemical labeling and imaging of RNA. Nucleic Acids Research, 44(2), pp.e16-e16.

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2015

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• Hardikar, A. A., Satoor, S. N., Karandikar, M. S., Joglekar, M. V., Puranik, A. S., Wong, W., Kumar, S., Limaye, A., Bhat, D. S., Januszewski, A. S., Umrani, M. R., Ranjan, A. K., Apte, K., Yajnik, P., Bhonde, R. R., Galande, S., Keech, A. C., Jenkins, A. J., & Yajnik, C. S. (2015). Multigenerational Undernutrition Increases Susceptibility to Obesity and Diabetes that Is Not Reversed after Dietary Recuperation. Cell metabolism, 22(2), 312–319. https://doi.org/10.1016/j.cmet.2015.06.008

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• Karmodiya, K., Pradhan, S.J., Joshi, B., Jangid, R., Reddy, P.C., and Galande, S. (2015). A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression. Epigenetics & Chromatin 8, 1-18.

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• Reddy, P.C., Sinha, I., Kelkar, A., Habib, F., Pradhan, S.J., Sukumar, R., and Galande, S. (2015a). Comparative sequence analyses of genome and transcriptome reveal novel transcripts and variants in the Asian elephant Elephas maximus. Journal of Biosciences 40, 891-907.

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• Reddy, P.C., Unni, M.K., Gungi, A., Agarwal, P., and Galande, S. (2015b). Evolution of Hox-like genes in Cnidaria: Study of Hydra Hox repertoire reveals tailor-made Hox-code for Cnidarians. Mechanisms of Development 138, Part 2, 87-96.

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• Pusalkar M, Suri D, Kelkar A, Bhattacharya A, Galande S, and Vaidya VA. (2015) Early stress evokes dysregulation of histone modifiers in the medial prefrontal cortex across the life span. Dev. Psychobiol. 58:198-210.

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• Mir R, Pradhan SJ, Patil P, Mulherkar R and Galande, S. (2015) Wnt/β-catenin signaling regulated SATB1 promotes colorectal cancer tumorigenesis and progression. Oncogene. 35:1679-1691.

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